A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report
generated on 2024-11-04, 17:49 EST
based on data in:
/work/gmgi/Fisheries/epiage/haddock/conversion_eff/aligned2
General Statistics
Showing 72/72 rows and 1/2 columns.
| Sample Name | % Aligned |
|---|---|
| Mae-265_S1_R1_001_val_1 | 2.5% |
| Mae-271_S2_R1_001_val_1 | 1.9% |
| Mae-275_S3_R1_001_val_1 | 4.2% |
| Mae-282_S4_R1_001_val_1 | 3.4% |
| Mae-284_S5_R1_001_val_1 | 4.8% |
| Mae-286_S6_R1_001_val_1 | 3.6% |
| Mae-288_S7_R1_001_val_1 | 4.8% |
| Mae-292_S8_R1_001_val_1 | 3.3% |
| Mae-299_S9_R1_001_val_1 | 2.0% |
| Mae-300_S10_R1_001_val_1 | 3.0% |
| Mae-303_S11_R1_001_val_1 | 3.4% |
| Mae-304_S12_R1_001_val_1 | 3.7% |
| Mae-324_S13_R1_001_val_1 | 3.1% |
| Mae-325_S14_R1_001_val_1 | 3.7% |
| Mae-331_S15_R1_001_val_1 | 13.1% |
| Mae-332_S16_R1_001_val_1 | 2.7% |
| Mae-334_S17_R1_001_val_1 | 4.4% |
| Mae-337_S18_R1_001_val_1 | 4.1% |
| Mae-340_S19_R1_001_val_1 | 3.2% |
| Mae-346_S20_R1_001_val_1 | 3.9% |
| Mae-348_S21_R1_001_val_1 | 2.9% |
| Mae-351_S22_R1_001_val_1 | 3.9% |
| Mae-355_S23_R1_001_val_1 | 4.9% |
| Mae-358_S24_R1_001_val_1 | 3.5% |
| Mae-363_S25_R1_001_val_1 | 4.5% |
| Mae-364_S26_R1_001_val_1 | 4.4% |
| Mae-366_S27_R1_001_val_1 | 6.8% |
| Mae-374_S28_R1_001_val_1 | 4.1% |
| Mae-377_S29_R1_001_val_1 | 2.5% |
| Mae-379_S71_R1_001_val_1 | 3.8% |
| Mae-381_S30_R1_001_val_1 | 4.8% |
| Mae-384_S72_R1_001_val_1 | 3.2% |
| Mae-386_S31_R1_001_val_1 | 2.5% |
| Mae-394_S32_R1_001_val_1 | 3.2% |
| Mae-398_S33_R1_001_val_1 | 3.2% |
| Mae-404_S34_R1_001_val_1 | 5.2% |
| Mae-407_S35_R1_001_val_1 | 3.1% |
| Mae-409_S36_R1_001_val_1 | 2.4% |
| Mae-412_S37_R1_001_val_1 | 3.5% |
| Mae-418_S38_R1_001_val_1 | 2.6% |
| Mae-423_S39_R1_001_val_1 | 3.3% |
| Mae-426_S40_R1_001_val_1 | 3.1% |
| Mae-430_S51_R1_001_val_1 | 2.2% |
| Mae-431_S41_R1_001_val_1 | 5.5% |
| Mae-435_S42_R1_001_val_1 | 2.8% |
| Mae-438_S43_R1_001_val_1 | 2.6% |
| Mae-443_S44_R1_001_val_1 | 2.8% |
| Mae-447_S45_R1_001_val_1 | 9.4% |
| Mae-450_S46_R1_001_val_1 | 4.3% |
| Mae-451_S47_R1_001_val_1 | 4.9% |
| Mae-456_S48_R1_001_val_1 | 5.6% |
| Mae-458_S49_R1_001_val_1 | 7.9% |
| Mae-459_S50_R1_001_val_1 | 1.7% |
| Mae-466_S52_R1_001_val_1 | 2.0% |
| Mae-472_S53_R1_001_val_1 | 2.9% |
| Mae-473_S54_R1_001_val_1 | 3.6% |
| Mae-479_S55_R1_001_val_1 | 9.4% |
| Mae-482_S56_R1_001_val_1 | 3.3% |
| Mae-486_S57_R1_001_val_1 | 6.5% |
| Mae-494_S58_R1_001_val_1 | 2.8% |
| Mae-500_S59_R1_001_val_1 | 4.7% |
| Mae-504_S60_R1_001_val_1 | 2.4% |
| Mae-508_S61_R1_001_val_1 | 4.2% |
| Mae-510_S62_R1_001_val_1 | 2.6% |
| Mae-511_S63_R1_001_val_1 | 4.2% |
| Mae-517_S64_R1_001_val_1 | 4.7% |
| Mae-518_S65_R1_001_val_1 | 2.7% |
| Mae-522_S66_R1_001_val_1 | 3.9% |
| Mae-523_S67_R1_001_val_1 | 3.1% |
| Mae-530_S68_R1_001_val_1 | 4.7% |
| Mae-534_S69_R1_001_val_1 | 4.0% |
| Mae-536_S70_R1_001_val_1 | 4.1% |
Bismark
Version:
0.22.2
Bismark is a tool to map bisulfite converted sequence reads and determine cytosine methylation states.DOI: 10.1093/bioinformatics/btr167.
Alignment Rates
Strand Alignment
Software Versions
Software Versions lists versions of software tools extracted from file contents.
| Software | Version |
|---|---|
| Bismark | 0.22.2 |
