Loading report..

Highlight Samples

Regex mode off

    Rename Samples

    Click here for bulk input.

    Paste two columns of a tab-delimited table here (eg. from Excel).

    First column should be the old name, second column the new name.

    Regex mode off

      Show / Hide Samples

      Regex mode off

        Export Plots

        px
        px
        X

        Download the raw data used to create the plots in this report below:

        Note that additional data was saved in ecoli_align_multiqc_report2_data when this report was generated.


        Choose Plots

        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        Save Settings

        You can save the toolbox settings for this report to the browser.


        Load Settings

        Choose a saved report profile from the dropdown box below:

        Tool Citations

        Please remember to cite the tools that you use in your analysis.

        To help with this, you can download publication details of the tools mentioned in this report:

        About MultiQC

        This report was generated using MultiQC, version 1.21

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/MultiQC/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2024-11-04, 17:49 EST based on data in: /work/gmgi/Fisheries/epiage/haddock/conversion_eff/aligned2


        General Statistics

        Showing 72/72 rows and 1/2 columns.
        Sample Name% Aligned
        Mae-265_S1_R1_001_val_1
        2.5%
        Mae-271_S2_R1_001_val_1
        1.9%
        Mae-275_S3_R1_001_val_1
        4.2%
        Mae-282_S4_R1_001_val_1
        3.4%
        Mae-284_S5_R1_001_val_1
        4.8%
        Mae-286_S6_R1_001_val_1
        3.6%
        Mae-288_S7_R1_001_val_1
        4.8%
        Mae-292_S8_R1_001_val_1
        3.3%
        Mae-299_S9_R1_001_val_1
        2.0%
        Mae-300_S10_R1_001_val_1
        3.0%
        Mae-303_S11_R1_001_val_1
        3.4%
        Mae-304_S12_R1_001_val_1
        3.7%
        Mae-324_S13_R1_001_val_1
        3.1%
        Mae-325_S14_R1_001_val_1
        3.7%
        Mae-331_S15_R1_001_val_1
        13.1%
        Mae-332_S16_R1_001_val_1
        2.7%
        Mae-334_S17_R1_001_val_1
        4.4%
        Mae-337_S18_R1_001_val_1
        4.1%
        Mae-340_S19_R1_001_val_1
        3.2%
        Mae-346_S20_R1_001_val_1
        3.9%
        Mae-348_S21_R1_001_val_1
        2.9%
        Mae-351_S22_R1_001_val_1
        3.9%
        Mae-355_S23_R1_001_val_1
        4.9%
        Mae-358_S24_R1_001_val_1
        3.5%
        Mae-363_S25_R1_001_val_1
        4.5%
        Mae-364_S26_R1_001_val_1
        4.4%
        Mae-366_S27_R1_001_val_1
        6.8%
        Mae-374_S28_R1_001_val_1
        4.1%
        Mae-377_S29_R1_001_val_1
        2.5%
        Mae-379_S71_R1_001_val_1
        3.8%
        Mae-381_S30_R1_001_val_1
        4.8%
        Mae-384_S72_R1_001_val_1
        3.2%
        Mae-386_S31_R1_001_val_1
        2.5%
        Mae-394_S32_R1_001_val_1
        3.2%
        Mae-398_S33_R1_001_val_1
        3.2%
        Mae-404_S34_R1_001_val_1
        5.2%
        Mae-407_S35_R1_001_val_1
        3.1%
        Mae-409_S36_R1_001_val_1
        2.4%
        Mae-412_S37_R1_001_val_1
        3.5%
        Mae-418_S38_R1_001_val_1
        2.6%
        Mae-423_S39_R1_001_val_1
        3.3%
        Mae-426_S40_R1_001_val_1
        3.1%
        Mae-430_S51_R1_001_val_1
        2.2%
        Mae-431_S41_R1_001_val_1
        5.5%
        Mae-435_S42_R1_001_val_1
        2.8%
        Mae-438_S43_R1_001_val_1
        2.6%
        Mae-443_S44_R1_001_val_1
        2.8%
        Mae-447_S45_R1_001_val_1
        9.4%
        Mae-450_S46_R1_001_val_1
        4.3%
        Mae-451_S47_R1_001_val_1
        4.9%
        Mae-456_S48_R1_001_val_1
        5.6%
        Mae-458_S49_R1_001_val_1
        7.9%
        Mae-459_S50_R1_001_val_1
        1.7%
        Mae-466_S52_R1_001_val_1
        2.0%
        Mae-472_S53_R1_001_val_1
        2.9%
        Mae-473_S54_R1_001_val_1
        3.6%
        Mae-479_S55_R1_001_val_1
        9.4%
        Mae-482_S56_R1_001_val_1
        3.3%
        Mae-486_S57_R1_001_val_1
        6.5%
        Mae-494_S58_R1_001_val_1
        2.8%
        Mae-500_S59_R1_001_val_1
        4.7%
        Mae-504_S60_R1_001_val_1
        2.4%
        Mae-508_S61_R1_001_val_1
        4.2%
        Mae-510_S62_R1_001_val_1
        2.6%
        Mae-511_S63_R1_001_val_1
        4.2%
        Mae-517_S64_R1_001_val_1
        4.7%
        Mae-518_S65_R1_001_val_1
        2.7%
        Mae-522_S66_R1_001_val_1
        3.9%
        Mae-523_S67_R1_001_val_1
        3.1%
        Mae-530_S68_R1_001_val_1
        4.7%
        Mae-534_S69_R1_001_val_1
        4.0%
        Mae-536_S70_R1_001_val_1
        4.1%

        Bismark

        Version: 0.22.2

        Bismark is a tool to map bisulfite converted sequence reads and determine cytosine methylation states.DOI: 10.1093/bioinformatics/btr167.

        Alignment Rates

        Created with MultiQC

        Strand Alignment

        Created with MultiQC

        Software Versions

        Software Versions lists versions of software tools extracted from file contents.

        SoftwareVersion
        Bismark0.22.2